biomaps-infra
Official@biomaps-infra
Comprehensive bioinformatics and computational research infrastructure providing programmatic access to genomic, proteomic, and chemical databases for scientific analysis and manuscript generation.
Agent Skills by biomaps-infra
Showing 176 vetted skills indexed across 1 GitHub repositories.
biomaps-infralib-pyopenms
Provides Python interface to OpenMS library for mass spectrometry analysis of proteomics and metabolomics data.
biomaps-infraworkflow-peer-review
Guide structured peer review of manuscripts and grant proposals.
biomaps-infralib-esm
Generate protein sequences and embeddings using ESM3 and ESM C.
biomaps-infralib-etetoolkit
Manipulate, analyze, and visualize phylogenetic trees with the ETE Toolkit.
biomaps-infralib-zarr-python
Store and query chunked, compressed N-dimensional arrays with Python.
biomaps-infrabio-neurokit2
Process and analyze physiological signals with the neurokit2 Python package.
biomaps-infralib-biopython
Manipulate biological sequences and parse FASTA, GenBank, PDB, and mmCIF files.
biomaps-infralib-deepchem
Trains and applies DeepChem machine learning models for molecular property prediction.
biomaps-infradb-ena
Retrieve nucleotide sequences, raw reads, and genome assemblies from ENA via REST APIs.
biomaps-infraanalysis-scientific-critical-thinking
Evaluate scientific claims and research methodologies for biases and evidence quality.
biomaps-infraweb-parallel-web
Search the web, conduct deep research, and extract URL content with saved results.
biomaps-infraservice-imaging-data-commons
Query, download, and visualize cancer imaging data from the NCI Imaging Data Commons.
biomaps-infraservice-opentrons-integration
Program OT-2 and Flex robots using the Opentrons Protocol API v2.
biomaps-infradb-alphafold
Retrieve AlphaFold protein structures by UniProt ID and download PDB/mmCIF files.
biomaps-infrabio-molecular-dynamics
Execute and analyze molecular dynamics simulations with OpenMM and MDAnalysis.
biomaps-infralib-pylabrobot
Control laboratory automation equipment through a unified Python SDK.
biomaps-infraviz-scientific-schematics
Generate publication-quality scientific diagrams from natural language descriptions.
biomaps-infrabio-scvi-tools
Train SCVI models on single-cell RNA-seq data with AnnData.
biomaps-infralib-gtars
Analyze genomic intervals with Rust and Python bindings for overlap detection and coverage tracks.
biomaps-infradb-reactome
Query the Reactome REST API for pathway enrichment and gene-pathway mapping.
biomaps-infralib-edgartools
Extract financial statements and XBRL data from SEC EDGAR filings.
biomaps-infraanalysis-scientific-brainstorming
Facilitate scientific ideation through guided brainstorming with SCAMPER, Six Thinking Hats, and Biomimicry.
biomaps-infradb-metabolomics-workbench
Query NIH Metabolomics Workbench REST API for metabolites and study data.
biomaps-infralib-astropy
Converts celestial coordinates, physical units, and computes cosmological models using Astropy in Python.
Frequently Asked Questions About biomaps-infra
FAQPage SchemaWhat specific research tasks are enabled by these resources?▼
These resources enable high-throughput processing of genomic sequences, protein structure retrieval, metabolic pathway enrichment analysis, and the execution of complex molecular dynamics simulations for drug discovery.
Which personas benefit most from this infrastructure?▼
Computational biologists, bioinformaticians, medicinal chemists, and research scientists working in genomics, proteomics, or clinical research will find these resources essential for data-driven discovery.
What are the primary dependencies for running these computational modules?▼
Most modules require a standard scientific environment with support for NumPy, pandas, and SciPy, alongside specific domain-dependent libraries like Biopython, RDKit, or PyTorch for machine learning tasks.