Agent Skills by Bingkun Zhao
Showing 49 vetted skills indexed across 2 GitHub repositories.
BKZhaosurvival_stats_execution
Execute survival analysis workflows including Kaplan-Meier, Cox regression, and ROC outputs.
BKZhaoclinical-capability-expansion
Formalize paper-facing gaps into reusable method families with executable scaffolds.
BKZhaopaper-actual-content-completion
Align research paper methods, figures, and tables with reproducible artifacts.
BKZhaoanndata
Store and manipulate annotated data matrices for single-cell genomics workflows.
BKZhaoscikit-survival
Perform survival analysis on censored time-to-event data with scikit-survival.
BKZhaokegg-database
Retrieve KEGG data and convert identifiers via the REST API.
BKZhaopymc
Build and validate Bayesian models with PyMC 5+ and ArviZ.
BKZhaoresearch-lookup
Route research queries between Parallel Chat API and Perplexity academic search.
BKZhaoshap
Compute SHAP values to explain model predictions with feature contributions.
BKZhaogene-database
Retrieve NCBI Gene data via E-utilities and Datasets APIs for annotation.
BKZhaobiorxiv-database
Query bioRxiv preprint metadata by keywords, authors, and date ranges.
BKZhaofred-economic-data
Query FRED and GeoFRED economic data through a unified API client.
BKZhaoscientific-schematics
Generate publication-quality scientific schematics from natural language descriptions.
BKZhaoseaborn
Create statistical data visualizations from pandas DataFrames using seaborn.
BKZhaogeo-database
Search GEO datasets and download series matrices via E-utilities and GEOparse.
BKZhaocitation-management
Generate BibTeX entries from CrossRef, PubMed, arXiv, and DataCite metadata with DOI validation and duplicate detection.
BKZhaoarxiv-database
Search arXiv preprints by keyword, author, category, or ID and return structured JSON with optional PDFs.
BKZhaoclinvar-database
Search ClinVar variants and retrieve clinical significance records via E-utilities.
BKZhaocodex-autoresearch
Run deterministic modify-verify-keep/discard loops with Codex across a repository.
BKZhaogit-github-update
Automates Git/GitHub commit, rebase-pull, and push workflows with preflight checks and staging.
BKZhaobiopython
Process biological sequence, structure, and phylogenetic data with Biopython.
BKZhaoscvi-tools
Train probabilistic variational models for single-cell omics analysis with batch correction.
BKZhaoensembl-database
Query Ensembl REST API for genes, sequences, variants, and orthologs across species.
BKZhaoplotly
Create interactive visualizations from Python data with Plotly Express and Graph Objects.