Yiru Chen
Community@chenyiru3 · Singapore
In coming computational biology PhD Student@Duke-NUS🇸🇬 Glad to have any technical discussion! Contact me: [email protected]
Agent Skills by Yiru Chen
Showing 111 vetted skills indexed across 1 GitHub repositories.
CHENyiru3github-auth
Detect available methods and configure GitHub authentication for git and gh CLI.
CHENyiru3github-repo-management
Automate GitHub repository management via gh CLI and git+curl REST API.
CHENyiru3github-pr-workflow
Automate GitHub PR workflows including branch creation, CI monitoring, and merges.
CHENyiru3github-code-review
Analyze diffs and post inline comments on GitHub pull requests.
CHENyiru3github-issues
Create, label, assign, view, and close GitHub issues via gh CLI or REST API.
CHENyiru3codebase-inspection
Analyze codebases with pygount for LOC counts, language breakdowns, code/comment ratios.
CHENyiru3bitwarden
Retrieve Bitwarden secrets via headless CLI authentication.
CHENyiru3auditing-python-security
Orchestrate Bandit, pip-audit, safety, and detect-secrets to audit Python projects.
CHENyiru3skill-seekers
Convert source materials into structured AI knowledge assets for multiple platforms.
CHENyiru3skill-creator
Automate end-to-end creation, evaluation, and refinement of Claude Code skills.
CHENyiru3chen-academic-page-maintainer
Maintain academic site consistency across publications, CV, and templates.
CHENyiru3page-keeper
Inspect website repositories to generate maintenance rulebooks and SKILL.md drafts.
CHENyiru3codebti
Run CodeBTI interviews to generate CodeStyle.md, SKILL.md, or SPEC.md for Python projects.
CHENyiru3geo-database
Search GEO datasets by accession, organism, and data type via E-utilities.
CHENyiru3kegg-database
Query KEGG REST API data for pathways, genes, compounds, and drugs.
CHENyiru3ensembl-database
Fetch gene annotations, sequences, variants, and orthologs via Ensembl REST API.
CHENyiru3human-cell-atlas
Query the Human Cell Atlas portal for reference datasets by tissue and organism.
CHENyiru3reactome-database
Identify Reactome pathways from gene identifiers via the Analysis Service.
CHENyiru3draft-spatial-methods
Draft spatial transcriptomics and single-cell RNA-seq Methods sections from scripts and notes.
CHENyiru3critique-bio-manuscript
Critique bioinformatics manuscripts for methodological flaws and data leakage.
CHENyiru3explain-bio-dl-model
Translate deep learning architectures into biologically grounded manuscript text.
CHENyiru3snakemake
Orchestrate reproducible bioinformatics pipelines across local and HPC environments.
CHENyiru3nextflow
Orchestrate scalable bioinformatics workflows across local, cluster, and cloud environments.
CHENyiru3metabolomics-workbench-database
Query the Metabolomics Workbench REST API for compounds, studies, and RefMet data.