Joseph Woodall
Community@josephwoodall
Data Scientist | Mini-side-project lover
Agent Skills by Joseph Woodall
Showing 175 vetted skills indexed across 1 GitHub repositories.
JosephWoodallmetabolomics-workbench-database
Query the Metabolomics Workbench REST API for metabolite, study, and RefMet data.
JosephWoodallpolars-bio
Perform genomic interval arithmetic on Polars DataFrames with SQL integration.
JosephWoodallbenchling-integration
Automate Benchling registry, inventory, ELN, and workflow management via API.
JosephWoodallnetworkx
Analyze and generate graphs with NetworkX algorithms and file formats.
JosephWoodallanndata
Organize annotated single-cell data matrices with metadata using AnnData.
JosephWoodallscikit-survival
Model censored survival data with scikit-survival workflows.
JosephWoodallqiskit
Design and run quantum circuits on IBM Quantum hardware using the Qiskit SDK.
JosephWoodalluspto-database
Consolidate USPTO patent and trademark access via PatentSearch, PEDS, TSDR, and Assignment APIs.
JosephWoodallscientific-brainstorming
Generates research hypotheses and ideas through a structured, phase-driven brainstorming workflow.
JosephWoodallkegg-database
Automate KEGG REST API queries for pathway and gene data.
JosephWoodallpymc
Build, fit, and validate Bayesian models with PyMC using MCMC and variational inference.
JosephWoodallpaper-2-web
Convert academic papers into interactive, layout-aware homepages.
JosephWoodallperplexity-search
Query Perplexity models via LiteLLM and OpenRouter for cited web search results.
JosephWoodallresearch-lookup
Route research queries to Parallel Chat API or Perplexity based on query intent.
JosephWoodallshap
Explain machine learning model predictions using SHAP Shapley values.
JosephWoodallzinc-database
Query ZINC catalog by ID or SMILES for similarity search and 3D structures.
JosephWoodallumap-learn
Reduce high-dimensional data into embeddings using UMAP for visualization and clustering.
JosephWoodallinterpro-database
Query InterPro REST API to annotate protein function, domains, and GO terms.
JosephWoodallimaging-data-commons
Query public IDC imaging collections and download DICOM series via idc-index.
JosephWoodallgeomaster
Unify GIS, remote sensing, and ML geospatial workflows across eight programming languages.
JosephWoodallsympy
Compute exact symbolic mathematics in Python using SymPy.
JosephWoodallvaex
Process billions of rows with Vaex's lazy, out-of-core DataFrames.
JosephWoodalljaspar-database
Retrieve and apply JASPAR transcription factor binding profiles to scan DNA sequences for regulatory motifs.
JosephWoodallalphafold-database
Retrieve AlphaFold structure predictions and confidence metrics by UniProt ID.