Agent Skills by HaoYang Zhu
Showing 44 vetted skills indexed across 1 GitHub repositories.
Ketomihinearchr-local
Provide offline ArchR documentation for scATAC-seq analysis workflows.
Ketomihinescglue-complete
Configure GLUE-based workflows for unpaired single-cell multi-omics integration and regulatory inference.
Ketomihinecellcharter-local-optimized
Identify and characterize spatial clusters in spatial-omics data using CellCharter.
Ketomihinesc-best-practices-complete-100percent
Guide single-cell analysis workflows from preprocessing to differential abundance testing.
Ketomihinecrewai
Orchestrate multi-agent crews and automate workflows with CrewAI.
Ketomihinespatialdata-io-docs-local
Provide offline access to SpatialData-IO API and CLI documentation.
Ketomihinesc-best-practices-auto
Structure best-practice workflows for single-cell AIRR analysis with Python packages.
Ketomihinescvelo-complete
Guide scVelo RNA velocity workflows from data loading to visualization.
Ketomihinemonocle3-truly-complete
Reconstruct developmental trajectories from scRNA-seq data using Monocle 3 in R.
Ketomihinespatialdata-docs-local
Provide offline SpatialData documentation and API references for local deployment.
Ketomihinetest
Generate actionable test templates from official documentation references.
Ketomihinescarches
Map single-cell datasets into reference atlases using scArches.
Ketomihineseurat-local
Provide offline access to Seurat v5/v4 documentation and API references.
Ketomihinespata2-docs-local
Provide offline access to SPATA2 API references and tutorials.
Ketomihineseurat-single-cell-analysis
Run Seurat v5 single-cell RNA-seq analysis in R from .rds/.rdata inputs.
Ketomihinexenium-benchmarking-docs-local
Provide offline Xenium benchmarking documentation with local pipeline references.
Ketomihinescanpy-complete
Guide Scanpy workflows for single-cell analysis on AnnData objects.
Ketomihineliana-py-complete
Infer ligand-receptor interactions from single-cell and spatial omics data with LIANA+.
Ketomihinerapids-singlecell-complete
Accelerate single-cell RNA-seq preprocessing and clustering on AnnData with RAPIDS.
Ketomihinedeveloping-heart-local-improved
Assemble and analyze spatial multi-omics data to build a Developing Heart atlas.
Ketomihinecellchat-pkg-local-fixed
Provide structured CellChat documentation for cell-cell communication analysis in R workflows.
Ketomihinespatialdata
Organize, query, and visualize spatial omics data with a unified Python framework.
Ketomihinecellcharter-local
Host a local HTTP server to serve CellCharter documentation offline.
Ketomihinebanksy-merged-v3
Automate BANKSY spatial transcriptomics analysis for multisample clustering and visualization.