Scott Handley
Community@shandley · St. Louis
Professor @ Washington University. Founder and occasional director of some bioinformatics Workshops. Director of Agentic AI, McDonnell Genome Institute (MGI)
Agent Skills by Scott Handley
Showing 11 vetted skills indexed across 3 GitHub repositories.
shandleydaa-guide
Identify differential abundance methods for sparse microbiome datasets across five statistical contexts.
shandleydaa-interpret
Parse DAA result TSVs to compute effect sizes and generate interpretation reports.
shandleydaa-diagnose
Diagnose microbiome count data sparsity, library size, and study design to recommend differential abundance analysis methods.
shandleyrevision-workflow
Draft point-by-point reviewer responses and track manuscript revision workflows.
shandleysubmission-prep
Generate cover letters, checklists, and guideline-compliant documents for journal submissions.
shandleymanuscript-writing
Organize academic manuscripts into IMRaD structure with templates and checklists.
shandleybibliography
Cross-check inline citations against bibliographies to identify missing or orphan references.
shandleyhuman-writing
Rewrite paragraphs into natural, human-like prose while preserving meaning.
shandleyscientific-style
Calibrate claim strength and citation placement in scientific writing sections.
shandleyscientific-figures
Generate and review publication-quality scientific figures with caption alignment checks.
shandleysteno
Interpret stenographic shorthand commands to automate coding workflows.