Badran Elshenawy
Community@wolf5996 · Oxford, United Kingdom
Postdoc in Virology & Spatial Transcriptomics @ Oxford NDMRB | DPhil Oncology (scRNA-Seq & Cancer) | R + HPC + Bioinformatics
Agent Skills by Badran Elshenawy
Showing 12 vetted skills indexed across 1 GitHub repositories.
md-to-html
Convert Markdown drafts into self-contained HTML via Quarto rendering.
developing-r-packages
Enforce roxygen2 documentation and R CMD check quality gates for R package development.
writing-qmd-scientific
Generate scientific Quarto documents with bullet-only prose and hashpipe code chunks.
tailoring-applications
Converts job adverts into formatted CV and PDF-ready application documents.
recommendation-letter-workflow
Create dated institution folders, edit Quarto content, and render recommendation letter PDFs.
creating-analysis-projects
Scaffold R analysis projects with read, scripts, checkpoints, and write directories.
qmd-runner
Generate tryCatch runners from Quarto .qmd files to isolate failing R chunks.
hugo-blog
Automates publishing of Crafty's README-synced .rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/.rdml/. files to PDF.
writing-labarchive-entries
Generate LabArchive notebook entries with PubMed-verified references.
writing-r-code
Creates WCAG and BestBet compliant, reusable, accessible HTML5/CSS3/JS code with ARIA and SEO optimization.
git-hygiene
Standardize Git commit messages, branching, and history rewrites.
md-format
Enforce blank lines and punctuation in Markdown lists for pandoc rendering.