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jshphjshphCommunity·1 Agent Skills Included

enzyme

Compile knowledge bases into fast, searchable concept graphs

Compiles markdown vaults, Obsidian notes, Readwise exports, and SQLite archives into a local concept graph with pre-computed thematic questions. Eliminates slow keyword grepping and cold-start memory by surfacing cross-cutting connections in about 8 milliseconds on device. Guides safe workspace setup, diagnosis, and repair with read-only inspection, backups, and reversible changes.
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npx skills add jshph/enzyme --all -g -y

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jshphjshph

enzyme

Index entities in Obsidian vaults to generate thematic questions.

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Frequently Asked Questions

FAQPage Schema
How to install Enzyme?▼

Run `npx skills add jshph/enzyme --all -g -y` in your terminal to install all skills in this suite globally.

What does Enzyme do with my notes?▼

It reads your markdown vault or text corpus once and compiles it into a concept graph of themes and questions, so searches find related ideas even when they share no keywords.

Can Enzyme search a SQLite database like email or messages?▼

Yes. The SQLite source skill inspects your database read-only, maps people, dates, and message columns with your approval, and indexes the archive without ever modifying the source data.

Will Enzyme change or delete my notes during setup?▼

No. Diagnosis is fully read-only, and any repair happens only after your explicit approval with a complete backup and a tested revert script.

Does Enzyme work with Claude Code and Codex?▼

Yes. It ships as a plugin and MCP server that run in Claude Code, Codex, Cursor, and other compatible clients.

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