academic-pipeline

Orchestrate a 10-stage academic research-to-publication workflow with integrity verification gates.

Updated May 13, 2026
One-click install
npx skills add https://github.com/Ricardo-Vae/codex-research-skills --skill academic-pipeline-ricardo-vae
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: academic-pipeline
Source: https://github.com/Ricardo-Vae/codex-research-skills/tree/main/skills/academic-pipeline
Command: npx skills add https://github.com/Ricardo-Vae/codex-research-skills --skill academic-pipeline-ricardo-vae

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

academic-pipeline coordinates an end-to-end academic workflow from research to a submission-ready manuscript while enforcing mandatory integrity verification and two-stage peer review, reducing the risk of fabricated citations or incorrect data slipping into publication.

Core Features & Use Cases

  • 10-stage research-to-publication orchestration: dispatches the correct underlying skills across research, writing, review, revision, final integrity, and final formatting.
  • Mandatory integrity verification checkpoints: runs pre-review (Stage 2.5) and final-check (Stage 4.5) with blocking failure semantics and explicit user confirmation.
  • Two-stage peer review loop: performs an initial full review (Stage 3) and a focused re-verification review after revision (Stage 3').
  • Reproducible workflow & auditable process record: tracks pipeline state and generates a “Paper Creation Process Record” as part of Stage 6.

Quick Start

Use academic-pipeline for this task. Please follow the original SKILL.md workflow completely and start from Stage 1 unless you already have a paper draft.

Frequently Asked Questions about academic-pipeline

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I manage a complete research-to-publication workflow with built-in citation verification?

An academic pipeline orchestrates the research-to-publication workflow by dispatching writing, review, and integrity verification tasks across a 10-stage process. It enforces mandatory citation verification checkpoints to prevent fabricated references from slipping into publication.

Can I start the paper workflow mid-way if I already have a manuscript draft?

Yes, the academic pipeline supports mid-entry for end-to-end paper creation. If you already have a paper draft, you can bypass the initial research stages and enter the workflow directly at the peer review and revision loops.

How does integrity verification work during the manuscript formatting process?

Integrity verification operates as blocking gates at Stage 2.5 and Stage 4.5 within the paper workflow. These checkpoints execute 7-mode failure-mode audits and halt stateful transitions until explicit user confirmation is received.

What is the best way to ensure reproducibility across peer review and revision loops?

Reproducibility is maintained by tracking pipeline state across two-stage peer review loops and generating an auditable Paper Creation Process Record. This ensures every revision and re-verification step is documented.

Does the academic pipeline handle both initial peer review and post-revision verification?

Yes, the workflow performs a full initial peer review at Stage 3 followed by a focused re-verification review at Stage 3' after revisions. This two-stage loop ensures manuscript integrity is validated before final formatting.

What are the limitations of using an automated pipeline for academic paper creation?

The pipeline requires mandatory user confirmation at integrity verification checkpoints, meaning it cannot fully automate publication decisions. Additionally, stateful transitions across review loops are blocked if 7-mode failure-mode audits detect integrity issues.