academic-pipeline

Orchestrate research-to-publication tasks with integrity gates and stage checkpoints.

2|Updated Apr 30, 2026

Search Tags:#academic #orchestration #pipeline #reproducibility #peer-review #integrity-check

Ready to run

npx skills add https://github.com/Siyou-Li/research-frog-skill --skill academic-pipeline-siyou-li

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: academic-pipeline
Source: https://github.com/Siyou-Li/research-frog-skill/tree/main/skills/academic-pipeline
Command: npx skills add https://github.com/Siyou-Li/research-frog-skill --skill academic-pipeline-siyou-li

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

The academic-pipeline orchestrates the end-to-end research-to-publication process by coordinating specialized sub-skills, enforcing mandatory integrity gates, and maintaining auditable provenance.

Core Features & Use Cases

Orchestrates a complete 10-stage pipeline from research to final manuscript, including integrity checks and two-stage reviews.
Dispatches specialized skills (deep-research, academic-paper, academic-paper-reviewer) and handles stage handoffs, status tracking, and checkpoint prompts.
Ensures reproducibility, traceability, and compliance through structured material passports and append-only logs.

Quick Start

Run a full pipeline from a new project: provide your research topic, or provide an initial paper/draft, and start Stage 1 RESEARCH with default guided mode.

Frequently Asked Questions about academic-pipeline

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I orchestrate an end-to-end research to publication pipeline?▼

You can orchestrate a research to publication pipeline by dispatching specialized sub-skills across 10 stages, enforcing integrity gates, and maintaining auditable provenance via structured material passports and append-only logs.

What is an integrity check in an academic research pipeline?▼

An integrity check in an academic pipeline is a mandatory gate that ensures reproducibility, traceability, and compliance during stage transitions, preventing unverified research outputs from advancing to the final manuscript.

How do I start a research pipeline from an existing paper draft?▼

You start a research pipeline from an existing draft by providing the initial paper as input, which allows the orchestration pipeline to enter mid-stage, track status, and handle revision loops while maintaining state checkpoints.

Can I use an automated pipeline for peer review and revisions?▼

Yes, you can use an automated pipeline for peer review by dispatching an academic-paper-reviewer sub-skill, which handles two-stage external reviews and manages revision loops through coordinated stage handoffs and checkpoint prompts.

Does the academic orchestration pipeline support reproducibility tracking?▼

Yes, the academic orchestration pipeline supports reproducibility tracking by coordinating pipeline state, enforcing integrity gates, and utilizing append-only logs to ensure all research outputs are fully auditable.

What are the limitations of automated academic paper generation pipelines?▼

Automated academic paper generation pipelines require configurable modes and agents to adapt to specific project requirements, meaning outputs still need human verification to ensure research integrity and compliance with peer-review standards.