academic-pipeline

Orchestrate research-to-publication tasks with integrity gates and stage checkpoints.

2|Updated Apr 30, 2026
One-click install
npx skills add https://github.com/Siyou-Li/research-frog-skill --skill academic-pipeline-siyou-li
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: academic-pipeline
Source: https://github.com/Siyou-Li/research-frog-skill/tree/main/skills/academic-pipeline
Command: npx skills add https://github.com/Siyou-Li/research-frog-skill --skill academic-pipeline-siyou-li

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

The academic-pipeline orchestrates the end-to-end research-to-publication process by coordinating specialized sub-skills, enforcing mandatory integrity gates, and maintaining auditable provenance.

Core Features & Use Cases

  • Orchestrates a complete 10-stage pipeline from research to final manuscript, including integrity checks and two-stage reviews.
  • Dispatches specialized skills (deep-research, academic-paper, academic-paper-reviewer) and handles stage handoffs, status tracking, and checkpoint prompts.
  • Ensures reproducibility, traceability, and compliance through structured material passports and append-only logs.

Quick Start

Run a full pipeline from a new project: provide your research topic, or provide an initial paper/draft, and start Stage 1 RESEARCH with default guided mode.

Frequently Asked Questions about academic-pipeline

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I orchestrate an end-to-end research to publication pipeline?

You can orchestrate a research to publication pipeline by dispatching specialized sub-skills across 10 stages, enforcing integrity gates, and maintaining auditable provenance via structured material passports and append-only logs.

What is an integrity check in an academic research pipeline?

An integrity check in an academic pipeline is a mandatory gate that ensures reproducibility, traceability, and compliance during stage transitions, preventing unverified research outputs from advancing to the final manuscript.

How do I start a research pipeline from an existing paper draft?

You start a research pipeline from an existing draft by providing the initial paper as input, which allows the orchestration pipeline to enter mid-stage, track status, and handle revision loops while maintaining state checkpoints.

Can I use an automated pipeline for peer review and revisions?

Yes, you can use an automated pipeline for peer review by dispatching an academic-paper-reviewer sub-skill, which handles two-stage external reviews and manages revision loops through coordinated stage handoffs and checkpoint prompts.

Does the academic orchestration pipeline support reproducibility tracking?

Yes, the academic orchestration pipeline supports reproducibility tracking by coordinating pipeline state, enforcing integrity gates, and utilizing append-only logs to ensure all research outputs are fully auditable.

What are the limitations of automated academic paper generation pipelines?

Automated academic paper generation pipelines require configurable modes and agents to adapt to specific project requirements, meaning outputs still need human verification to ensure research integrity and compliance with peer-review standards.