alignment-and-mapping
CommunityReproducible read-alignment pipelines.
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Read alignment and artifact preparation pipeline that converts raw sequencing reads into sorted, indexed alignments with mapping statistics ready for downstream analysis.
Core Features & Use Cases
- End-to-end read alignment and post-processing to produce ready-to-use BAM/CRAM and QC metrics.
- Flexible workflow supporting common DNA/RNA mapping tools and input formats.
- Real-world use: process paired-end RNA-Seq data to obtain a clean, indexed alignment and basic QC reports.
Quick Start
Run the alignment workflow on your paired-end FASTQ files against your reference to generate a sorted BAM file.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alignment-and-mapping Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#alignment-and-mapping Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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