alphafold-structure-prediction
CommunityPredict protein structures with AlphaFold 2/3 and Boltz-1.
Authorpradyumnasagar
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill predicts protein structures using AlphaFold 2/3 and Boltz-1, helping researchers and scientists save time and resources in protein structure prediction.
Core Features & Use Cases
- Protein Structure Prediction: Run AlphaFold 2/3 and Boltz-1 for accurate protein structure prediction.
- MSA Generation: Generate Multiple Sequence Alignments with MMseqs2 or HHblits.
- pLDDT and PAE Interpretation: Analyze the confidence of predicted structures using pLDDT and PAE scores.
- Multimer Prediction: Predict multimeric protein structures for protein-protein interactions.
- AFDB Querying: Query the AlphaFold Database for existing protein structures.
- Use Case: A researcher needs to predict the structure of a new protein for a drug discovery project. They can use this Skill to generate the structure and analyze its confidence using pLDDT and PAE scores.
Quick Start
Run the alphafold-structure-prediction skill to predict the structure of a protein sequence.
Dependency Matrix
Required Modules
alphafold3boltzmmseqs2hhsuitepy3Dmol
Components
scriptsreferencesassets
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alphafold-structure-prediction Download link: https://github.com/pradyumnasagar/open-research-skills/archive/main.zip#alphafold-structure-prediction Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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