alphafold-validation
CommunityValidate AlphaFold designs with PyMOL insights.
AuthorANaka
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill helps researchers validate designed proteins by inspecting AlphaFold/ESMFold predictions, visualizing per-residue confidence (pLDDT), inter- and intra-mol confidence (pAE), and assessing self-consistency RMSD within PyMOL.
Core Features & Use Cases
- pLDDT coloring to assess per-residue confidence in structure predictions.
- pAE interpretation for relative positioning confidence between domains or chains.
- Self-consistency RMSD calculations to verify designed structures fold as intended.
- AF2-Multimer validation and interface analysis for binder designs.
- Batch screening support across multiple predictions to rank candidates.
- ESMFold comparisons to speed up early design passes.
Quick Start
Load your AlphaFold / ESMFold prediction files into PyMOL and begin analyzing with the recommended pLDDT/pAE coloring and RMSD workflow.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alphafold-validation Download link: https://github.com/ANaka/claudemol/archive/main.zip#alphafold-validation Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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