Predict protein structures for monomers and multimers with AlphaFold2.
npx skills add https://github.com/PKU-YuanGroup/OpenAI4S --skill alphafold2-pku-yuangroup
Please help me install this Agent Skill. Skill: alphafold2 Source: https://github.com/PKU-YuanGroup/OpenAI4S/tree/main/skills/alphafold2 Command: npx skills add https://github.com/PKU-YuanGroup/OpenAI4S --skill alphafold2-pku-yuangroup
This Skill solves the problem of predicting protein structures, which is crucial for fields like biomolecular research and drug discovery.
Run the alphafold2 skill to predict the structure of a protein sequence provided in the 'sequence.fasta' file.
High-intent search queries and answers about installing and using this skill.
You can predict protein structures by running the AlphaFold2 model on a provided 'sequence.fasta' file, which generates 3D structures for monomers and multimers.
Yes, AlphaFold2 protein structure prediction requires a GPU and access to the ColabFold MSA server to perform multiple sequence alignment.
Yes, AlphaFold2 validates designed protein sequences by evaluating pLDDT, ipTM, and RMSD metrics to confirm structural confidence and stability.
Yes, AlphaFold2 supports multiple sequence alignment by running quick MSA predictions through the public MMseqs2 server to inform the protein structure prediction.
Yes, AlphaFold2 supports predicting both monomer and multimer protein structures, making it suitable for complex biomolecular research and drug discovery applications.
zongtingweiPredict protein and complex structures with Boltz-1 / Boltz-2 and output CIF files.
biomaps-infraRetrieve AlphaFold protein structures by UniProt ID and download PDB/mmCIF files.
adaptyvbioPredict protein structures from FASTA sequences using Chai-1.
PKU-YuanGroupPredict protein, nucleic-acid, and small-molecule complex structures with Boltz-2.
