alterlab-alphafold-db
CommunityAccess AlphaFold structures at scale.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
AlphaFold DB access and integration for retrieving structure predictions, confidence metrics, and files programmatically.
Core Features & Use Cases
- Retrieve AlphaFold predictions by UniProt; download model files (mmCIF/BCIF/PDB) and access confidence metrics (pLDDT, PAE); filter by taxonomy; bulk-download via Google Cloud; integrate with downstream analysis.
- Compare and extract data for structural biology workflows, drug discovery, and proteome-wide analyses.
- Use Case: Imagine you need AF models for a list of UniProt accessions and want to batch download all corresponding model files and confidence data for analysis.
Quick Start
Execute a script that fetches the AlphaFold prediction for a UniProt accession and downloads its model file and confidence JSON.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-alphafold-db Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-alphafold-db Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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