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alterlab-biopython

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Biopython toolkit for molecular biology workflows

Education & Research#python#bioinformatics#phylogeny#sequence#pdb#biopython#entrez
AuthorAlterLab-IEU
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Biopython streamlines computational molecular biology by providing a unified, programmatic toolkit for classic tasks like sequence handling, database access, structural analysis, and phylogenetics, eliminating the need to glue together disparate libraries.

Core Features & Use Cases

  • Sequence handling and I/O with Bio.Seq and Bio.SeqIO for FASTA, GenBank, and PDB
  • Database access via Bio.Entrez for PubMed and GenBank records
  • Structural bioinformatics and phylogenetics with Bio.PDB and Bio.Phylo
  • Advanced workflows: BLAST integration, motifs analysis, and population genetics tooling
  • Use case: build reproducible pipelines that parse GenBank records, fetch PubMed metadata, align sequences, and infer phylogenies

Quick Start

Install Biopython and start by reading a FASTA file with SeqIO or fetching PubMed metadata with Entrez.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

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Please help me install this Skill:
Name: alterlab-biopython
Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-biopython

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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