alterlab-bioservices
CommunityUnified cross-database bioinformatics tooling.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Cross-database research in bioinformatics is fragmented across many services; this Skill provides a single Python interface to access ~40 web services for integrated queries and workflows.
Core Features & Use Cases
- Unified access to protein, gene, pathway, compound, and GO data across multiple resources via bioservices.
- Batch processing & robust workflows: map identifiers, fetch sequences, and analyze pathways in batch with error handling and retry strategies.
- Use Case: researchers can map UniProt IDs to KEGG, retrieve GO annotations, and discover related pathways in one cohesive script.
Quick Start
Install the bioservices package and run one of the example workflows, e.g., execute scripts/protein_analysis_workflow.py with a target protein ID.
Dependency Matrix
Required Modules
bioservices
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-bioservices Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-bioservices Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.