alterlab-cobrapy
CommunityCOBRApy workflows for metabolic modeling.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
COBRApy-based workflows for modeling cellular metabolism are powerful but complex; this Skill streamlines setup, execution, and interpretation of simulations across multiple steps.
Core Features & Use Cases
- Load genome-scale metabolic models and perform standard FBA to predict growth
- Conduct FVA to explore flux variability and robustness
- Run gene and reaction deletions, gapfilling, and production-envelope analyses
- Design and evaluate production strains with guided knockouts and flux analyses
- Reproduce workflows from the references and adapt models to new organisms
- Educational demonstrations and teaching labs for systems biology
Quick Start
Load a genome-scale model with COBRApy and run a basic FBA to maximize biomass.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-cobrapy Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-cobrapy Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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