alterlab-deeptools
CommunityAnalyze NGS data with fast, reproducible QC.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
NGS data analysis requires converting alignments to comparable coverage tracks, performing quality control, and visualizing results across samples; this toolkit provides an integrated workflow for BAM to bigWig conversion, QC metrics, and publication-ready visualizations.
Core Features & Use Cases
- Convert BAM alignments to normalized coverage tracks (bigWig/bedGraph) for ChIP-seq, RNA-seq, and ATAC-seq.
- Perform QC analytics (fingerprint, correlation, PCA) and generate heatmaps and profiles around genomic features.
- Create enrichment visualizations and peak-region analyses to compare samples and assess data quality.
Quick Start
Start by validating your input files with the provided script and then generate a deepTools workflow to begin QC and visualization.
Dependency Matrix
Required Modules
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Components
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-deeptools Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-deeptools Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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