alterlab-etetoolkit
CommunityUnified phylogenetics toolkit for researchers
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Phylogenetics researchers need a cohesive toolkit to manipulate trees, detect evolutionary events, annotate with taxonomy, and create publication-ready visuals without wrestling with disparate scripts.
Core Features & Use Cases
- Tree manipulation and analysis (load, prune, reroot, traverse, compute RF distances)
- Evolutionary events and orthology/paralogy detection
- NCBI taxonomy integration and lineage annotation
- Rich visualization options (PDF/SVG/PNG) and extended features
- Use cases: build species trees, identify ortholog groups, annotate trees with taxonomy, generate publication-ready figures
Quick Start
Start by loading a gene tree with alignment, configure species naming, and run an orthology analysis to group genes by speciation events.
Dependency Matrix
Required Modules
ete3
Components
scriptsreferences
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-etetoolkit Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-etetoolkit Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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