alterlab-geo
CommunityAccess GEO data for gene expression analyses.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
GEO hosts vast, heterogeneous gene expression data; researchers spend significant time locating, downloading, and standardizing datasets across GSEs, GSMs, GPLs, and their associated files.
Core Features & Use Cases
- Dataset discovery: search GEO datasets by accession, organism, data type (RNA-Seq, microarray), or publication date to identify relevant studies.
- Data retrieval & annotation: download series matrices, SOFT, or MINiML files and map probes to genes using platform annotations for downstream analysis.
- Reproducible workflows: assemble metadata and expression data across multiple studies for meta-analyses or comparative transcriptomics.
Quick Start
Run a quick query to fetch GSE123456 and download its series matrix file for immediate exploration.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-geo Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-geo Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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