alterlab-histolab
CommunityFast WSI tiling for rapid data prep.
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Histolab speeds up digital pathology workflows by automating tile extraction and preprocessing of whole-slide images, reducing manual tiling effort and enabling scalable dataset preparation.
Core Features & Use Cases
- Automates tissue detection, tile extraction (RandomTiler, GridTiler, ScoreTiler)
- Supports preprocessing via image/morphological filters and masks for robust tile selection
- Provides visualization, reporting, and workflow templates for training data, whole-slide analysis, and quality control
- Typical use cases include rapid dataset curation for deep learning, reproducible slide analyses, and tissue characterization across cohorts.
Quick Start
Load a slide, choose a tiler (RandomTiler, GridTiler, or ScoreTiler), and run tile extraction to generate tiles and a report.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-histolab Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-histolab Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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