alterlab-hmdb
CommunityQuery HMDB data for metabolite insights.
Education & Research#metabolomics#pathways#hmdb#structure-search#data-download#metabolite#spectral-search
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
HMDB data is widely used in metabolomics and biomedical research, but programmatic access and integration into analysis pipelines can be tedious. This Skill consolidates discovery of metabolite information from HMDB, including chemical properties, pathways, clinical associations, and spectral data, enabling faster identification and data integration across workflows.
Core Features & Use Cases
- Search by metabolite name, HMDB ID, or synonyms to locate entries
- Structure and spectral queries to aid compound identification
- Retrieve chemical properties, biospecimen data, pathways, disease associations, and cross-references
- Download bulk datasets (XML/CSV) or access programmatic interfaces for local analysis
Quick Start
Use the HMDB skill to fetch data for a target metabolite, e.g., HMDB0001234, and retrieve its core properties.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-hmdb Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-hmdb Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.