alterlab-open-science

Mentor researchers on adopting open science practices across study lifecycles.

58|9|Updated Mar 16, 2026
One-click install
npx skills add https://github.com/AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-open-science
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: alterlab-open-science
Source: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/tree/main/skills/research-tools/alterlab-open-science
Command: npx skills add https://github.com/AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-open-science

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes references (resource) components.

What problem does it solve?

Open science guidance helps researchers reliably plan, execute, and share transparent, reproducible studies by clarifying preregistration, data sharing, FAIR data, open access publishing, and reproducible workflows.

Core Features & Use Cases

  • Preregistration guidance across OSF registries and templates (AsPredicted, OSF Registries)
  • Registered Reports processes (Stage 1 IPA, Stage 2 follow-up) and publication incentives
  • FAIR data principles and open data sharing, with license and repository guidance
  • Open access publishing routes (Green, Gold, Diamond) and rights retention strategies
  • Reproducible computational workflows using containers, notebooks, and code sharing
  • Data management plans guidance aligned to funders (NSF, NIH)
  • Open peer review practices and use of persistent repositories for preservation
  • Guidance for reproducible notebooks and computational notebooks best practices
  • Licensing and governance considerations for research outputs

Quick Start

Review the included preregistration templates and select one to initialize your OSF project preregistration.

Frequently Asked Questions about alterlab-open-science

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I preregister my study on OSF using AsPredicted templates?

Preregistration on OSF involves selecting an AsPredicted or OSF Registries template to document hypotheses and analysis plans before data collection. This Skill provides templates and platform recommendations to initialize your project.

What are FAIR data principles and how do they apply to data sharing?

FAIR data principles ensure research outputs are Findable, Accessible, Interoperable, and Reusable. This Skill guides you through implementing FAIR data sharing, including repository selection and applying appropriate licenses to datasets.

What is the difference between Green, Gold, and Diamond open access publishing?

Green, Gold, and Diamond open access represent different routes for publishing research, varying by repository archiving versus journal fees. This Skill helps you navigate these publishing routes and implement rights retention strategies.

How do I create a data management plan aligned with NSF or NIH funder requirements?

Creating a data management plan for NSF or NIH requires outlining how data will be managed, shared, and preserved according to funder guidelines. This Skill provides structured guidance to align your data management plans with specific funder requirements.

Can I use registered reports for my study and what are the Stage 1 and Stage 2 processes?

Registered reports involve a two-stage process where Stage 1 accepts your proposal based on methodology before data collection, and Stage 2 publishes results after peer review. This Skill mentors you through Stage 1 IPA and Stage 2 follow-up workflows.

How do I set up reproducible computational workflows using containers and notebooks?

Reproducible computational workflows use containers, notebooks, and code sharing to ensure analyses can be reliably executed by others. This Skill offers best practices for computational notebooks and reproducibility workflows to implement transparency.