alterlab-pyopenms
CommunityEnd-to-end MS data analysis with PyOpenMS.
Education & Research#data-analysis#mass-spectrometry#proteomics#feature-detection#python-api#identification#openms
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Facilitate end-to-end mass spectrometry data analysis for proteomics by providing a Python-based interface to OpenMS, enabling researchers to perform feature detection, identification, and quantification within a single framework.
Core Features & Use Cases
- Comprehensive data handling: MSExperiment, MSSpectrum, MSChromatogram, and identification data management.
- Feature detection, peptide/protein identification, and quantification workflows with export to standard OpenMS formats (featureXML, idXML, consensusXML).
- Real-world scenario: process a raw LC-MS/MS run, detect features, map identifications, and generate exportable results for downstream analysis.
Quick Start
Load a mzML file, run peak picking and feature detection, and export the resulting feature map.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-pyopenms Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-pyopenms Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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