alterlab-scikit-bio
CommunityBioinformatics toolkit for sequence analysis.
Education & Research#bioinformatics#alignment#diversity#ordination#phylogenetics#sequence-analysis#biom
AuthorAlterLab-IEU
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Biological data workflows are often ad hoc, requiring extensive scripting to handle sequence data, alignments, and phylogenetic analyses. This skill provides a unified toolkit to streamline bioinformatics research by enabling convenient handling, analysis, and interpretation of biological sequence data within Python, reducing manual scripting and integration effort.
Core Features & Use Cases
- Sequence I/O and format support (FASTA, FASTQ, GenBank, Newick, BIOM)
- Sequence manipulation, alignment (pairwise and multiple), and motif analysis
- Phylogenetic tree construction, manipulation, and evolutionary distance calculations
- Diversity metrics, ordination (PCoA/CCA/RDA), and associated statistical tests
- Integrates with downstream analytics tools and data visualization workflows
Quick Start
Install scikit-bio and load sequences from a FASTA file to begin basic analyses.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: alterlab-scikit-bio Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-scikit-bio Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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