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alterlab-tiledbvcf

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Efficient TileDB-VCF storage and queries.

Data & Analytics#bioinformatics#genomics#ingestion#query#data-storage#tiledb#tiledb-vcf
AuthorAlterLab-IEU
Version1.0.0
Installs0

System Documentation

What problem does it solve?

TileDB-VCF enables efficient storage and retrieval of genomic variant-call data, addressing the complexity of managing large-scale VCF datasets and simplifying data workflows for researchers.

Core Features & Use Cases

  • High-performance ingestion of single-sample VCFs with index support, enabling incremental sample addition without reprocessing.
  • Fast region-based queries across thousands of samples, with parallel execution and cloud storage compatibility.
  • Flexible data export and interoperability for downstream analyses and cohort studies.
  • Suitable for population genomics workflows, GWAS preparation, and scalable variant data management.

Quick Start

Install TileDB-VCF, create a dataset, and begin ingesting single-sample VCFs to start querying variants.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: alterlab-tiledbvcf
Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-tiledbvcf

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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