alterlab-umap

Community

Visualize high-D data with fast UMAP embeddings.

AuthorAlterLab-IEU
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Reducing complex, high-dimensional datasets to meaningful, low-dimensional representations for visualization, exploration, and downstream modeling.

Core Features & Use Cases

  • Dimensionality reduction: obtain 2D/3D embeddings for visualization and exploratory analysis.
  • Clustering preprocessing: enhance density-based clustering with informative embeddings (e.g., HDBSCAN).
  • Advanced variants: supports Parametric UMAP, DensMAP, and AlignedUMAP for specialized workflows.
  • Integration with ML pipelines: fits into sklearn pipelines and supports transform/inverse_transform workflows.

Quick Start

Run a basic embedding by fitting UMAP to your standardized features and visualize the 2D projection.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: alterlab-umap
Download link: https://github.com/AlterLab-IEU/AlterLab-Academic-Skills/archive/main.zip#alterlab-umap

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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