Run the nf-core/ampliseq pipeline for amplicon sequencing analysis.
npx skills add https://github.com/danilomonge/nf-claw --skill ampliseq
Please help me install this Agent Skill. Skill: ampliseq Source: https://github.com/danilomonge/nf-claw/tree/main/pipelines/ampliseq Command: npx skills add https://github.com/danilomonge/nf-claw --skill ampliseq
It turns a complex amplicon sequencing pipeline into a validated, reproducible run plan so you can process marker-gene data without guessing flags or looking up release-specific options.
Ask the ampliseq skill to analyze your samplesheet, choose the desired pipeline version and profile, and produce a validated command for the output directory you want.
High-intent search queries and answers about installing and using this skill.
You can run amplicon sequencing analysis by using this Skill to execute the nf-core/ampliseq pipeline, which validates your samplesheet and parameters for 16S, ITS, CO1, and 18S workflows before generating a reproducible run plan.
Yes, the nf-core ampliseq pipeline supports paired-end Illumina, single-end Illumina, PacBio, and IonTorrent datasets, allowing you to process diverse amplicon sequencing inputs through a validated workflow.
This Skill validates your microbiome samplesheet structure alongside runtime parameters for DADA2 and QIIME2, ensuring your taxonomic databases and downstream reporting options match your pinned nf-core release before execution.
The best way to generate abundance tables is by running the nf-core/ampliseq pipeline, which handles primer trimming, quality filtering, and taxonomic assignment to produce comprehensive reports for your marker-gene data.
Yes, the nf-core ampliseq pipeline supports optional phylogenetic placement and downstream diversity analysis, enabling comprehensive microbiome studies from raw marker-gene sequences to final abundance reports.
You ensure reproducible amplicon sequencing runs by using this Skill to validate release-pinned parameters and runtime options, guaranteeing the exact parameter set required by that specific nf-core version is applied.
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KetomihineGuide single-cell analysis workflows from preprocessing to differential abundance testing.
