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atac-seq

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ATAC-seq analysis from QC to peaks.

Education & Research#footprinting#qc#atac-seq#peak-calling#differential-accessibility#chromatin-accessibility#motif-analysis
Authorzongtingwei
Version1.0.0
Installs0

System Documentation

What problem does it solve?

ATAC-seq analysis streamlines turning raw chromatin accessibility data into reliable QC metrics, peak calls, and interpretable accessibility summaries.

Core Features & Use Cases

  • QC evaluation: reads depth, TSS enrichment, duplication, FRiP for library quality assessment
  • ATAC-specific peak calling: macs3 with ATAC settings for robust peak identification
  • Consensus matrix and differential accessibility: build peak matrices across samples and identify changes in accessibility
  • Motif or footprint follow-up: optional downstream analyses for regulatory insight

Quick Start

Run the ATAC-seq workflow to QC, call peaks, construct consensus matrices, and assess differential accessibility across samples.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

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Please help me install this Skill:
Name: atac-seq
Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#atac-seq

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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