atacseq
CommunityReproducible ATAC-seq pipeline runs
Authordanilomonge
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill removes the manual guesswork from running the nf-core/atacseq workflow by turning a validated samplesheet and parameter set into a reproducible ATAC-seq analysis run with the correct pinned release, outputs, and provenance.
Core Features & Use Cases
- Release-pinned execution: Runs the exact tracked atacseq release so results stay consistent with the repository state.
- End-to-end ATAC-seq analysis: Supports sample input validation, alignment, peak calling, QC, and differential analysis in one workflow.
- Research-ready output: Produces organized results, pipeline metadata, and MultiQC reporting for downstream interpretation and sharing.
- Use case: A bioinformatics researcher can submit a CSV samplesheet and get a complete, reproducible ATAC-seq results directory without hunting through upstream documentation.
Quick Start
Ask the Skill to run the atacseq pipeline on your samplesheet, confirm the required parameters, and generate a reproducible results directory.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: atacseq Download link: https://github.com/danilomonge/nf-claw/archive/main.zip#atacseq Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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