Generate multiple analysis scripts from a validated template across exposure/outcome pairs.
npx skills add https://github.com/Aperivue/medsci-skills --skill batch-cohort
Please help me install this Agent Skill. Skill: batch-cohort Source: https://github.com/Aperivue/medsci-skills/tree/main/skills/batch-cohort Command: npx skills add https://github.com/Aperivue/medsci-skills --skill batch-cohort
Batch-cohort addresses the need to systematically generate many analysis scripts from a single validated methodology to accelerate batch analyses and ensure consistency across multiple exposure/outcome combinations.
Provide a validated template and exposure/outcome lists to generate per-combination scripts plus a master runner.
High-intent search queries and answers about installing and using this skill.
Batch code generation automates producing multiple scripts from one template by swapping exposure/outcome variables. It enforces reproducibility constraints, requiring a fixed covariate set, event checks, and a frozen template with a SHA256 hash.
Batch code generation ensures reproducibility by freezing the methodology template with a SHA256 hash and enforcing a fixed covariate set. It automatically documents covariate adjustments and event checks across all generated analysis pipelines.
Yes, batch cohort analysis supports generating reproducible pipelines and code for data-analytic studies using either R or Python. You provide a validated template and the tool generates the appropriate per-combination scripts plus a master runner.
The best way to run multiple cohort analyses with the same methodology is using a single validated template. You provide exposure/outcome lists to batch generate individual scripts and aggregate results into a unified summary matrix for comparison.
Yes, a fixed covariate set is a strict requirement for automating analysis script generation. The tool enforces safety constraints to ensure covariate adjustments are documented consistently across all exposure/outcome combinations in your batch.
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