Bayesian inference in R

Perform Bayesian inference in R with brms and CmdStanR.

189|26|Updated Jan 29, 2026
One-click install
npx skills add https://github.com/ab604/claude-code-r-skills --skill bayesian-inference-in-r
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: Bayesian inference in R
Source: https://github.com/ab604/claude-code-r-skills/tree/main/.claude/skills/r-bayes
Command: npx skills add https://github.com/ab604/claude-code-r-skills --skill bayesian-inference-in-r

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This Skill enables data scientists and researchers to perform Bayesian inference in R using brms, providing a structured workflow from model specification to posterior analysis, priors, and diagnostics.

Core Features & Use Cases

  • Brms modeling: Fit multilevel and complex hierarchical models using brms with a CmdStanR backend.
  • DAG validation: Validate causal structures with dagitty and ggdag to assess identifiability and adjustment sets.
  • Marginal effects & visualization: Compute marginal effects, derive posterior summaries, and visualize results for interpretation.
  • Use Case: Compare competing models in hierarchical experiments or observational studies to infer credible effects and perform model diagnostics.

Quick Start

brm(formula = outcome ~ predictor + (1 | group), data = data, family = gaussian()) summary(model)

Frequently Asked Questions about Bayesian inference in R

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I fit a multilevel Bayesian model in R using brms?

To fit a multilevel Bayesian model in R using brms, you specify a formula with grouping structures like `outcome ~ predictor + (1 | group)`, pass your data frame, and run the model with a CmdStanR backend to generate posterior summaries and diagnostic plots.

What is the workflow for Bayesian posterior analysis in R?

Bayesian posterior analysis involves specifying model priors, fitting the model with brms, running multiple chains for diagnostics, and computing marginal effects to interpret credible intervals and visualize posterior distributions across social and scientific data.

Can I validate causal structures and adjustment sets before running brms models?

Yes, you can validate causal structures before fitting brms models by using dagitty and ggdag to construct Directed Acyclic Graphs (DAGs), which help assess identifiability and determine appropriate adjustment sets for your observational study.

How do I specify and manage priors for Bayesian inference in R?

Managing priors for Bayesian inference in R involves explicitly defining prior distributions for your model parameters within the brms formula interface, ensuring they reflect domain knowledge before running multiple chains to generate posterior summaries.

Does brms support computing marginal effects for interpreting Bayesian model results?

Yes, brms supports computing marginal effects to interpret Bayesian model results by deriving posterior summaries from the fitted model, allowing you to visualize credible effects across different predictor values for research scenarios.