bbknn
CommunityFast, simple batch correction for scRNA-seq data.
AuthorCHENyiru3
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Batch-balanced KNN provides batch-aware integration of single-cell data by balancing neighbor contributions across batches to suppress technical variation while preserving biology.
Core Features & Use Cases
- Batch-aware integration for multi-batch scRNA-seq datasets compatible with Scanpy workflows.
- Fast construction of a balanced kNN graph to improve downstream UMAP, clustering, and interpretation.
- Suitable for large datasets and scenarios with multiple batches or experiments.
Quick Start
Install BBKNN and run bbknn on your AnnData object to generate a batch-balanced neighbor graph.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: bbknn Download link: https://github.com/CHENyiru3/AI-Skills-Collections/archive/main.zip#bbknn Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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