Organize neuroscience datasets into BIDS-compliant directory structures.
npx skills add https://github.com/crazymsn/academic-skills --skill bids-crazymsn
Please help me install this Agent Skill. Skill: bids Source: https://github.com/crazymsn/academic-skills/tree/main/academic-skills/bids Command: npx skills add https://github.com/crazymsn/academic-skills --skill bids-crazymsn
Brain Imaging Data Structure (BIDS) standardizes the organization, description, and sharing of neuroscience data, reducing ambiguity and enabling automated tooling across studies.
Run the BIDS workflow on your dataset to produce a fully BIDS-compliant directory ready for sharing and analysis.
High-intent search queries and answers about installing and using this skill.
To convert DICOM data to a BIDS dataset, you can use conversion workflows like HeuDiConv, dcm2bids, or BIDScoin to organize raw neuroimaging files into BIDS-compliant directory structures with provenance tracking.
BIDS validation checks your neuroscience datasets against the BIDS specification to catch common metadata gaps, ensuring standardized organization, reducing ambiguity, and enabling automated tooling across studies for reproducible data sharing.
You can organize EEG and PET data into BIDS structures alongside MRI. The BIDS standard applies across these related modalities, enabling consistent directory organization, metadata inheritance, and dataset validation for diverse neuroscience data.
To prepare BIDS derivatives scaffolds for pipelines like fMRIPrep, generate BIDS metadata sidecars such as dataset_description.json and participants.json, ensuring your organized dataset meets the structural requirements for automated analysis workflows.
The best way to manage BIDS metadata sidecars is to organize raw data into BIDS-compliant directories and validate against the BIDS schema, utilizing metadata inheritance to maintain consistent dataset_description.json and participants.json files.
Lord1EgyptOrganize and validate neuroscience data according to the BIDS specification.
MarvinCuiInterpret fMRIPrep derivatives, HTML reports, and confounds for downstream fMRI workflow planning.
Estrella-231Organize neuroscience and biomedical data into BIDS-compliant directory structures.
tassiovaleOrganize, query, validate, and convert neuroscience data into BIDS-compliant datasets.
