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yibeichan
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bidsapp-nidm-standards

Audit BIDSapp repositories against NIDM integration and BABS compatibility standards.

Updated Jan 1, 2026
Search Tags:#workflow#standards#container#neuroimaging#bidsapp#nidm#babs
One-click install
npx skills add https://github.com/yibeichan/claude-skills --skill bidsapp-nidm-standards
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: bidsapp-nidm-standards
Source: https://github.com/yibeichan/claude-skills/tree/main/skills/bidsapp-nidm-standards
Command: npx skills add https://github.com/yibeichan/claude-skills --skill bidsapp-nidm-standards

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

This skill codifies and disseminates standards for BIDSapp repositories that implement NIDM integration and BABS compatibility, ensuring consistent structure, metadata, and workflows across neuroimaging projects.

Core Features & Use Cases

  • Standard repository structure templates for BIDSapps with NIDM integration.
  • Prescribed CLI argument conventions, NIDM input/output patterns, and BABS configuration guidance.
  • Guidance for refactoring existing repos to align with the BIDSapp Nidm standards and for creating new BIDSapps.

Quick Start

  • Audit your BIDSapp repository against the Nidm/NIDM standards and update the SKILL.md and related references accordingly.

Frequently Asked Questions about bidsapp-nidm-standards

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
What are the standards for BIDSapp repositories with NIDM integration?▼

BIDSapp NIDM standards prescribe repository structure, CLI argument conventions, provenance integration, and container configuration. They ensure consistent metadata and workflows across neuroimaging projects implementing NIDM and BABS compatibility.

How do I audit a BIDSapp repository for NIDM and BABS compatibility?▼

To audit a BIDSapp repository, validate the presence of a SKILL.md frontmatter, check references to reference docs, and review the repository against standard NIDM integration workflows for copy, run, and integrate operations.

Does my neuroimaging workflow need BABS configuration to support NIDM integration?▼

Yes, BABS configuration is part of the prescribed standards for BIDSapp repositories. It works alongside NIDM input and output patterns to ensure your neuroimaging workflow maintains proper provenance integration and container configuration.

How do I refactor an existing BIDSapp to align with NIDM standards?▼

Refactoring a BIDSapp involves updating repository structure templates, aligning CLI argument conventions, and configuring NIDM input and output patterns. You should update the SKILL.md and related references to match the standard NIDM integration workflow.

What is the standard NIDM integration workflow for neuroimaging containers?▼

The standard NIDM integration workflow outlines a three-step process: copy, run, and integrate. This workflow ensures proper provenance integration and consistent container configuration across BIDSapp repositories.

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