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bindingdb-query

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Query BindingDB for drug-target binding affinities.

Data & Analytics#rest-api#pdb#smiles#uniprot#drug-target#bindingdb#binding-affinity
AuthorQSong-github
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Binding affinity data for protein-ligand pairs is scattered across multiple sources and formats; this skill centralizes access to experimentally measured constants (Ki, Kd, IC50, EC50) from BindingDB, enabling quick, evidence-grounded retrieval.

Core Features & Use Cases

  • Auto-detects input as UniProt IDs, PDB IDs, or SMILES strings and fetches corresponding binding data.
  • Returns structured affinity records including target names, affinity types and values, and source identifiers (PMID/DOI).
  • Supports both single-entity and batch queries to support discovery and validation workflows.
  • Use case: researchers can look up binding data for a drug and its protein targets to support mechanism-of-action analyses or bibliography curation.

Quick Start

Ask the skill for binding affinities of a drug by name, for example imatinib.

Dependency Matrix

Required Modules

None required

Components

Standard package

đź’» Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bindingdb-query
Download link: https://github.com/QSong-github/DrugClaw/archive/main.zip#bindingdb-query

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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