Query BindingDB for protein–ligand affinities via UniProt, PDB, or SMILES inputs.
npx skills add https://github.com/QSong-github/DrugClaw --skill bindingdb-query
Please help me install this Agent Skill. Skill: bindingdb-query Source: https://github.com/QSong-github/DrugClaw/tree/main/skills/dti/bindingdb Command: npx skills add https://github.com/QSong-github/DrugClaw --skill bindingdb-query
Binding affinity data for protein-ligand pairs is scattered across multiple sources and formats; this skill centralizes access to experimentally measured constants (Ki, Kd, IC50, EC50) from BindingDB, enabling quick, evidence-grounded retrieval.
Ask the skill for binding affinities of a drug by name, for example imatinib.
High-intent search queries and answers about installing and using this skill.
To query BindingDB for binding affinities using a UniProt ID, you provide the identifier as input and the skill auto-detects it to retrieve structured protein-ligand affinity records. This returns experimentally measured constants like Ki, Kd, IC50, and EC50.
Yes, you can retrieve IC50 and Kd values using a SMILES string. The skill auto-detects SMILES inputs to fetch corresponding binding data from BindingDB, returning structured affinity records with target names and source identifiers like PMID or DOI.
The BindingDB REST API supports retrieval of Ki, Kd, IC50, and EC50 affinity metrics. It returns these experimentally measured constants as a unified, structured set of affinity records with optional literature identifiers.
Yes, BindingDB query supports PDB IDs for fetching protein-ligand binding data. The skill auto-detects PDB ID inputs to retrieve affinity records, providing target names, affinity values, and source citations for mechanism-of-action analyses.
To look up binding data for a specific drug and its protein targets, you query the skill by drug name, SMILES, or protein identifier. It retrieves binding affinities from BindingDB, supporting both single-entity and batch discovery workflows.
Yes, the skill caps the number of binding affinity records returned per query to ensure readability. This prevents overly large result sets when fetching structured protein-ligand binding data from the BindingDB public REST API.
SciMate-AIRetrieve BindingDB affinities for proteins and ligands by UniProt IDs, SMILES, or PubChem IDs.
qinyan-aiRetrieves binding affinity data from BindingDB by target or compound.
MrGKanevExtract and format bibliographic data from CrossRef, PubMed, and arXiv into BibTeX.
jaechang-hitsQuery the GtoPdb REST API for receptor-ligand interaction data.
