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bio-crispr-screens-mageck-analysis

Official

MAGeCK analysis for pooled CRISPR screens.

Data & Analytics#analysis#bioinformatics#genomics#screen#crispr#mageck
Authorstellaromics
Version1.0.0
Installs0

System Documentation

What problem does it solve?

MAGeCK provides a robust workflow to analyze pooled CRISPR screens, handling count normalization, gene ranking, and pathway analysis to identify essential genes, drug targets, or resistance mechanisms.

Core Features & Use Cases

  • MAGeCK count, test, and MLE workflows to identify essential or resistant genes from CRISPR screens.
  • Pathway analysis and visualization with MAGeCK-VISPR.
  • Use case: analyze dropout screens to find essential genes or enrichment screens for resistance.

Quick Start

Run MAGeCK analysis on your CRISPR screen data to obtain gene-level results.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-crispr-screens-mageck-analysis
Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-crispr-screens-mageck-analysis

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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