bio-de-results
CommunityExtract, annotate, and export DE results.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
DE analysis of RNA-seq data often yields raw results that require cleaning, enrichment with gene annotations, and formatting for reporting. This skill consolidates extraction, filtering, annotation, and export into ready-to-share tables and reports.
Core Features & Use Cases
- Extract & filter: Retrieve DE results from DESeq2 or edgeR and apply significance and effect-size thresholds.
- Annotate: Enrich results with gene symbols, descriptions, and cross-database identifiers.
- Export: Generate CSV or Excel workbooks with all results, significant subsets, and ranked lists for pathway analysis.
- Use Case: A researcher finishes a differential expression analysis and needs publication-ready tables and a GSEA-ready gene list.
Quick Start
Run the workflow to extract DE results from a fitted DESeq2/edgeR model, annotate genes, and export ready-for-share reports.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-de-results Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-de-results Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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