bio-metabolomics-targeted-analysis
CommunityAbsolute targeted metabolite quantification
System Documentation
What problem does it solve?
Provides a reproducible workflow to convert MRM/SRM peak areas into absolute metabolite concentrations, handling calibration curves, internal standard normalization, and validation metrics so researchers can report reliable quantitative results.
Core Features & Use Cases
- Build and fit calibration curves (linear, log-log, weighted 1/x or 1/x^2) and compute R² for quality assessment.
- Back-calculate sample concentrations from Skyline or instrument export files and apply dilution factors and internal standard normalization.
- Compute method validation metrics (accuracy, precision/CV, bias), determine LOD and LOQ from residuals or blanks, and flag QC failures.
- Use Case: Quantify multiple analytes from Skyline export, validate assay performance with low/medium/high QC levels, and export a results table with QC flags for reporting.
Quick Start
Quantify metabolites by asking the agent to build weighted calibration curves from my standard series, back-calculate sample concentrations from the Skyline export, normalize by internal standards, compute CV/accuracy for QCs, and export a CSV of final concentrations.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-metabolomics-targeted-analysis Download link: https://github.com/dailycafi/metabolism-skills/archive/main.zip#bio-metabolomics-targeted-analysis Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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