bio-metabolomics-targeted-analysis

Community

Absolute targeted metabolite quantification

Authordailycafi
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Provides a reproducible workflow to convert MRM/SRM peak areas into absolute metabolite concentrations, handling calibration curves, internal standard normalization, and validation metrics so researchers can report reliable quantitative results.

Core Features & Use Cases

  • Build and fit calibration curves (linear, log-log, weighted 1/x or 1/x^2) and compute R² for quality assessment.
  • Back-calculate sample concentrations from Skyline or instrument export files and apply dilution factors and internal standard normalization.
  • Compute method validation metrics (accuracy, precision/CV, bias), determine LOD and LOQ from residuals or blanks, and flag QC failures.
  • Use Case: Quantify multiple analytes from Skyline export, validate assay performance with low/medium/high QC levels, and export a results table with QC flags for reporting.

Quick Start

Quantify metabolites by asking the agent to build weighted calibration curves from my standard series, back-calculate sample concentrations from the Skyline export, normalize by internal standards, compute CV/accuracy for QCs, and export a CSV of final concentrations.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-metabolomics-targeted-analysis
Download link: https://github.com/dailycafi/metabolism-skills/archive/main.zip#bio-metabolomics-targeted-analysis

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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