bio-neuro-lit

Review biology and neuroscience literature using Europe PMC, Full-Text Resolver, Exa, and DeepXiv.

1|Updated Jul 23, 2026
One-click install
npx skills add https://github.com/chaobrain/BrainX-skill --skill bio-neuro-lit-chaobrain
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: bio-neuro-lit
Source: https://github.com/chaobrain/BrainX-skill/tree/main/skills/bio-neuro-lit
Command: npx skills add https://github.com/chaobrain/BrainX-skill --skill bio-neuro-lit-chaobrain

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires exa-py, deepxiv-sdk, and includes scripts (resource) and references (resource) components.

What problem does it solve? Conducting a rigorous biology or neuroscience literature review requires searching multiple databases, deduplicating records, retrieving full text, and synthesizing evidence across papers, which is slow and error-prone when done manually. ## Core Features & Use Cases - Structured discovery and reading pipeline: Searches Europe PMC as the primary source, optionally expands recall with Exa, then reads selected papers through the Full-Text Resolver or DeepXiv progressive reading for arXiv papers. - Normalization and evidence synthesis: Deduplicates works by PMCID, PMID, DOI, arXiv ID, or title, ranks candidates by relevance, and produces a comparative review with consensus, disagreements, and gaps. - Modeling-memory handoff: Appends modeling-relevant literature evidence to an existing brainmodeling-memory.md file when findings affect modeling or validation decisions. - Use Case: Ask how conductance-based neuron model parameters are fitted from electrophysiology recordings, and receive a synthesized review of key papers with full-text evidence, version provenance, and unresolved questions. ## Quick Start Use the bio-neuro-lit skill to review the literature on parameter fitting of conductance-based neuron models from patch-clamp recordings.

Frequently Asked Questions about bio-neuro-lit

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I review neuroscience literature with Europe PMC?

Formulate targeted Lucene queries with TITLE_ABS qualifiers and call the Europe PMC search_articles tool with result_type core. Deduplicate results by PMCID, PMID, DOI, or title, then read selected papers through the Full-Text Resolver.

How do I read a full-text paper from a PMCID or DOI?

Call the Full-Text Resolver get_fulltext tool with the strongest identifier in the order PMCID, DOI, PMID, or exact metadata. It returns normalized Markdown with source, version, and relationship provenance.

Does this skill work without an Exa API key?

Yes, Exa is optional and only used for recall expansion. When exa-py or EXA_API_KEY is missing, the workflow records that recall expansion was unavailable and continues with Europe PMC as the primary source.

When should I use DeepXiv instead of the Full-Text Resolver?

Use DeepXiv for computational neuroscience or ML-neuroscience papers with arXiv IDs when progressive brief, head, then section reading is more efficient than loading the full document. Prefer the Full-Text Resolver for ordinary PMC and journal papers.

What are the limitations of this literature review workflow?

It is not a generic clinical-medicine or computer-science search workflow and does not use standalone arXiv, Semantic Scholar, or Zotero sources. PDF-only versions are not parsed, so those papers remain abstract-only evidence.