bio-pathway-gsea
CommunityReveal pathway shifts from ranked gene lists.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Analyzing genomic data often requires identifying which biological pathways or processes are coordinately affected across a ranked list of genes. This skill provides a streamlined, reproducible way to detect subtle enrichment signals without arbitrary cutoffs.
Core Features & Use Cases
- Ranked-list GSEA: Perform gene set enrichment analysis using gseGO and gseKEGG to detect coordinated changes.
- Flexible ranking: Supports multiple ranking statistics (log2 fold-change, signed p-value, or Wald statistic) and converts gene identifiers for interpretation.
- Real-world use: Researchers compare conditions to identify enriched pathways across time-course or treatment contrasts.
Quick Start
Run GSEA on your ranked gene list to identify enriched GO and KEGG pathways.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-pathway-gsea Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-pathway-gsea Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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