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bio-pathway-wikipathways

Official

Open-pathway enrichment for gene lists.

Data & Analytics#enrichment#gene-list#gsea#clusterProfiler#wikipathways#org.Hs.eg.db#rWikiPathways
Authorstellaromics
Version1.0.0
Installs0

System Documentation

What problem does it solve?

WikiPathways enrichment analysis on gene lists to reveal open, community-curated pathways and enable multi-species insights through stable ORA and GSEA workflows.

Core Features & Use Cases

  • Over-representation analysis using enrichWP against WikiPathways to identify enriched pathways across multiple organisms.
  • Gene Set Enrichment Analysis (GSEA) on ranked gene lists to detect coordinated pathway-level changes.
  • ID conversion and result interpretation: convert gene symbols to Entrez IDs and produce readable results with setReadable.

Quick Start

Run WikiPathways enrichment on your significant genes to identify enriched pathways across species.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-pathway-wikipathways
Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-pathway-wikipathways

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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