bio-reporting-jupyter-reports
OfficialParameterized Jupyter reports with papermill.
Data & Analytics#reports#bioinformatics#jupyter#notebooks#batch-processing#parameterization#papermill
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Automates the creation of reproducible, parameterized Jupyter notebooks for bioinformatics analyses using papermill, enabling consistent reporting and easy sharing.
Core Features & Use Cases
- Parameterized notebook templates for RNA-seq, single-cell, and other pipelines.
- Batch execution across multiple samples with automatic report generation.
- Export options for HTML and PDF to facilitate sharing and publication.
Quick Start
Request a parameterized Jupyter notebook for RNA-seq QC analysis and execute it with papermill.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-reporting-jupyter-reports Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-reporting-jupyter-reports Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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