bio-single-cell-cell-annotation
CommunityAutomated cell-type labeling with references.
Data & Analytics#single-cell#scRNA-seq#cell-type-annotation#celltypist#SingleR#reference-datasets#Azimuth
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Automated cell-type labeling across single-cell datasets using reference-based methods to achieve consistent, reproducible annotations.
Core Features & Use Cases
- Automated annotation using multiple reference tools (CellTypist, scPred, SingleR, Azimuth) to assign cell-type labels.
- Confidence scoring, filtering, and consensus labeling for robust results.
- Compatibility with common single-cell workflows and integration with AnnData/Seurat objects, plus validation against canonical markers.
Quick Start
Provide an annotated single-cell data matrix and run automated cell-type annotation using reference-based methods such as CellTypist, SingleR, Azimuth, or scPred.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: bio-single-cell-cell-annotation Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-single-cell-cell-annotation Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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