bio-single-cell-trajectory-inference
CommunityInfer cell trajectories and pseudotime.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Reconstruct developmental pathways from single-cell RNA-seq data by ordering cells along trajectories and estimating pseudotime to reveal differentiation dynamics.
Core Features & Use Cases
- Integrates Monocle3, Slingshot, and scVelo to infer trajectories, branch structure, and RNA velocity.
- Supports root-cell specification, pseudotime extraction, and cross-method comparisons for validation.
- Use case: study differentiation trajectories in embryonic samples or lineage tracing experiments, or compare pseudotime across conditions.
Quick Start
Provide your single-cell dataset and request trajectory inference to obtain pseudotime and lineage structure.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: bio-single-cell-trajectory-inference Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-single-cell-trajectory-inference Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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