bio-splicing-pipeline
CommunityEnd-to-end splicing analysis: FASTQ to results.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end splicing analysis from RNA-seq data, orchestrating alignment, junction QC, differential splicing testing, and visualization to deliver reliable results with reproducible workflows.
Core Features & Use Cases
- STAR 2-pass alignment for improved junction discovery and quantification
- Differential splicing analysis with rMATS-turbo and optional IsoformSwitchAnalyzeR
- Sashimi plot visualization and standard reporting for publication-ready results
- Use Case: Analyze a multi-condition RNA-seq experiment to identify condition-specific splice events and visualize top candidates
Quick Start
Run a complete splicing analysis on a set of RNA-seq FASTQ files, producing differential splicing results and sashimi plots.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-splicing-pipeline Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-splicing-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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