bio-tcr-bcr-analysis-mixcr-analysis
CommunityAnalyze TCR/BCR clonotypes with MiXCR
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Perform V(D)J alignment and clonotype assembly from TCR-seq or BCR-seq data using MiXCR to identify clonotypes and their frequencies.
Core Features & Use Cases
- End-to-end V(D)J analysis: align reads to reference, refine/assemble clonotypes, and export clonotype tables with V/D/J usage and CDR3 sequences.
- Supports multiple data types and presets (amplicon, 10x VDJ) for bulk and single-cell repertoires, with Python-ready outputs.
- Python integration: parse MiXCR outputs into pandas-friendly data frames for downstream analyses.
Quick Start
Run MiXCR analysis on your TCR/BCR sequencing data to align reads, assemble clonotypes, and export results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: bio-tcr-bcr-analysis-mixcr-analysis Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#bio-tcr-bcr-analysis-mixcr-analysis Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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