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bio-workflows-biomarker-pipeline

Official

End-to-end biomarker discovery workflow.

Data & Analytics#validation#discovery#omics#shap#panel#biomarker#classifier
Authorstellaromics
Version1.0.0
Installs0

System Documentation

What problem does it solve?

Biomarker research in omics data is data-hungry, error-prone, and time-consuming when done manually; this skill automates the entire workflow from data prep to validated biomarker signatures.

Core Features & Use Cases

  • End-to-end biomarker discovery with Boruta or LASSO stability selection
  • Nested cross-validated classifier training and robust performance estimates
  • SHAP-based interpretation and biomarker panel export
  • Validation-ready outputs for external datasets and prospective studies

Quick Start

Build a validated biomarker panel and classifier from omics expression data and metadata.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: bio-workflows-biomarker-pipeline
Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-biomarker-pipeline

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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