bio-workflows-clip-pipeline
OfficialEnd-to-end CLIP-seq analysis from FASTQ to motifs.
Authorstellaromics
Version1.0.0
Installs0
System Documentation
What problem does it solve?
End-to-end CLIP-seq analysis from FASTQ to binding site annotation and motif enrichment.
Core Features & Use Cases
- Automates CLIP-seq preprocessing: UMI extraction, adapter trimming, alignment, and deduplication.
- Performs peak calling and binding-site annotation for multiple CLIP variants (HITS-CLIP, iCLIP, eCLIP, PAR-CLIP).
- Enables motif enrichment analysis on identified peaks to discover RNA-binding protein motifs.
Quick Start
Run the complete CLIP-seq workflow on a FASTQ dataset to derive peaks and enriched motifs.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: bio-workflows-clip-pipeline Download link: https://github.com/stellaromics/fast-bioinfo/archive/main.zip#bio-workflows-clip-pipeline Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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